#NEXUS 
[MacClade 4.0 registered to Yuji Inagaki, Dalhousie University]


BEGIN DATA;
	DIMENSIONS  NTAX=16 NCHAR=280;
	FORMAT DATATYPE=PROTEIN  SYMBOLS = " 1 2 3 4"  MISSING=? GAP=-  INTERLEAVE ;
	CHARSTATELABELS  
		1  1.1,
  2  1.2,  3  1.3,  4  1.4,  5  1.5,  6  1.6,
  7  1.7,  8  1.8,  9  1.9,  10  1.10,  11  1.11,
  12  1.12,  13  1.13,  14  1.14,  15  1.15,  16  1.16,
  17  1.17,  18  1.18,  19  1.19,  20  1.20,  21  1.21,
  22  1.22,  23  1.23,  24  1.24,  25  1.25,  26  1.26,
  27  1.27,  28  1.28,  29  1.29,  30  1.30,  31  1.31,
  32  1.32,  33  1.33,  34  1.34,  35  1.35,  36  1.36,
  37  1.37,  38  1.38,  39  1.39,  40  1.40,  41  1.41,
  42  1.42,  43  1.43,  44  1.44,  45  1.45,  46  1.46,
  47  1.47,  48  1.48,  49  1.49,  50  1.50,  51  1.51,
  52  1.52,  53  1.53,  54  1.54,  55  1.55,  56  1.56,
  57  1.57,  58  1.58,  59  1.59,  60  1.60,  61  1.61,
  62  1.62,  63  1.63,  64  1.64,  65  1.65,  66  1.66,
  67  1.67,  68  1.68,  69  1.69,  70  1.70,  71  1.71,
  72  1.72,  73  1.73,  74  1.74,  75  1.75,  76  1.76,
  77  1.77,  78  1.78,  79  1.79,  80  1.80,  81  1.81,
  82  1.82,  83  1.83,  84  1.84,  85  1.85,  86  1.86,
  87  1.87,  88  1.88,  89  1.89,  90  1.90,  91  1.91,
  92  1.92,  93  1.93,  94  1.94,  95  1.95,  96  1.96,
  97  1.97,  98  1.98,  99  1.99,  100  1.100,  101  1.101,
  102  1.102,  103  1.103,  104  1.104,  105  1.105,  106  1.106,
  107  1.107,  108  1.108,  109  1.109,  110  1.110,  111  1.111,
  112  1.112,  113  1.113,  114  1.114,  115  1.115,  116  1.116,
  117  1.117,  118  1.118,  119  1.119,  120  1.120,  121  1.121,
  122  1.122,  123  1.123,  124  1.124,  125  1.125,  126  1.126,
  127  1.127,  128  1.128,  129  1.129,  130  1.130,  131  1.131,
  132  1.132,  133  1.133,  134  1.134,  135  1.135,  136  1.136,
  137  1.137,  138  1.138,  139  1.139,  140  1.140,  141  1.141,
  142  1.142,  143  1.143,  144  1.144,  145  1.145,  146  1.146,
  147  1.147,  148  1.148,  149  1.149,  150  1.150,  151  1.151,
  152  1.152,  153  1.153,  154  1.154,  155  1.155,  156  1.156,
  157  1.157,  158  1.158,  159  1.159,  160  1.160,  161  1.161,
  162  1.162,  163  1.163,  164  1.164,  165  1.165,  166  1.166,
  167  1.167,  168  1.168,  169  1.169,  170  1.170,  171  1.171,
  172  1.172,  173  1.173,  174  1.174,  175  1.175,  176  1.176,
  177  1.177,  178  1.178,  179  1.179,  180  1.180,  181  1.181,
  182  1.182,  183  1.183,  184  1.184,  185  1.185,  186  1.186,
  187  1.187,  188  1.188,  189  1.189,  190  1.190,  191  1.191,
  192  1.192,  193  1.193,  194  1.194,  195  1.195,  196  1.196,
  197  1.197,  198  1.198,  199  1.199,  200  1.200,  201  1.201,
  202  1.202,  203  1.203,  204  1.204,  205  1.205,  206  1.206,
  207  1.207,  208  1.208,  209  1.209,  210  1.210,  211  1.211,
  212  1.212,  213  1.213,  214  1.214,  215  1.215,  216  1.216,
  217  1.217,  218  1.218,  219  1.219,  220  1.220,  221  1.221,
  222  1.222,  223  1.223,  224  1.224,  225  1.225,  226  1.226,
  227  1.227,  228  1.228,  229  1.229,  230  1.230,  231  1.231,
  232  1.232,  233  1.233,  234  1.234,  235  1.235,  236  1.236,
  237  1.237,  238  1.238,  239  1.239,  240  1.240,  241  1.241,
  242  1.242,  243  1.243,  244  1.244,  245  1.245,  246  1.246,
  247  1.247,  248  1.248,  249  1.249,  250  1.250,  251  1.251,
  252  1.252,  253  1.253,  254  1.254,  255  1.255,  256  1.256,
  257  1.257,  258  1.258,  259  1.259,  260  1.260,  261  1.261,
  262  1.262,  263  1.263,  264  1.264,  265  1.265,  266  1.266,
  267  1.267,  268  1.268,  269  1.269,  270  1.270,  271  1.271,
  272  1.272,  273  1.273,  274  1.274,  275  1.275,  276  1.276,
  277  1.277,  278  1.278,  279  1.279,  280  1.280		;

MATRIX

[                                                                   10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280]
[                                                                   .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .]

'Isochrysis sp. SAG 927-2 [gi|22022457|gb|AY119717.1|]'    IFSAHFAIIFLWVSQAYFHGARFSNYSAWLLNPPSAQVVWPIVGQEILNQITSGVFQMWRASGITNETELYWTAMGGLVMSALMVFAGWFHYHKAHHLAGLLGLGCLSWSGHQIHISLPINKLLDAGVPLPHELLLNPITGSLWLSDTAHHHLASWHAQLAINLAMLGSVSIIVAHHMYAMPPYPYIGVDYPTQLSLFTHHMWIGGFCVCGAAAHGAIFMVRDLRHRDAIISHLNWVCIFLGTHSFGLYIHNDTMRALGRQDMFSDKAIQLQPIFAKWIQ   [280]
'Pavlova gyrans [gi|22022459|gb|AY119718.1|]'              IFSAHFSIIFLWISGMFFHGARFSNYSAWLSNPPSAQIVWPIVGQEILNQITSGFFQIWRAAGITNEVELYWTAIGGLVASGLMLFAGWFHYHKSHHLAGLLGLGSLSWAGHQIHIALPINKLLDAGVPLPHEFLLNPVTGGLWLTDTAHHHLASWHAQLAINLAMVGSLSIIVAHHMYAMPPYPYIATDYATQLSLFTHHMWIGGFCVVGAGAHASIFMVRDLRHREAIISHLNWVCIFLGMHSFGLYIHNDTMRALGRKDMFSDSAIKLEPVFAKWIQ   [280]
'Rhodomonas abbreviata [gi|22022453|gb|AY119715.1|]'       IFSAHFSIIFLWLSGMYFHGARFSNYSAWLSNPPSAQVVWPIVGQEILNQVTSGFFQIWRASGITSEVELYWCALAGLIMSGLMIFAGWFHYHKAHHLSGLLGLGCLSWAGHQIHISLPINKLLDAGVPLPHEFLLNPVTGGLWLSDTAHHHLASWHAQLAINLAMMGSVSIIVAHHMYAMPPYPYIATDYPTQLSIFTHHMWIGGFCVTGAAAHAGIFMVRDIRHRDAIISHLNWICIFLGFHSFGLYIHNDTMRALGRQDMFSDTAIQLKPVFAQWVQ   [280]
'Guillardia theta[gi|11467607|ref|NC 000926.1|]'           IFSAHFSIIFLWISGMHFHGARFSNYSAWLSNPPSAQVVWPIVGQEILNQVTSGFFQIWRAEGITSEVELYWCAVAGLLMSGLMIFAGWFHYHKAHHLSGLLGLGCLSWAGHQIHVGLPINKLLDAGVPLPHEFLLNPVTGGLWLSDTAHHHLASWHSQLAINLAMMGSLSIIVAHHMYAMPAYPFIATDYPTQLSIFTHHMWIGGFCICGAAAHAGIFMVRDIRHRDAIISHLNWICIFLGFHSFGLYIHNDTMRALGRQDMFSDTAIQLKPVFAQWVQ   [280]
'Bangiopsis subsimplex [gi|22022423|gb|AY119700.1|]'       IFSAHFAIIFLWISGMYFHGARFSNYVAWLSNPPSAQIVWPVVGQEILNQITSGFFQLWRASGITNETQLYATALGGLVMSGLMLFAGWFHYHKSHHLAGLLGLGCLSWAGHQIHVSLPINKLLDAGVPLPHELLLNPVTGGLWLSDTAHHHLASWHAQLAINLAMLGSLSILVAHHMYSMPPYPYLATDYPTQLSLFTHHMWIGGFCVVGAGAHGAIFMVRDIRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRQDMFSDTAIQLQPIFAQWIQ   [280]
'Porphyridium aerugineum [gi|22022433|gb|AY119705.1|'      IFSAHFSVIFLWLSGMYFHGARFSNYVAWLSNPPSAQVVWPIVGQDILNQITSGFFQLWRASGITNEKQLYATAIGGLVMSALMLFAGWFHYHKAHHLAGLLGLGCLSWAGHQIHVSLPINKLLDAGVPLPHEFILNPITGGLWLSDTAHHHLASWHAQLAINLAMIGSLSIIVAHHMYAMPPYPYIATDYPTQLSLFTHHMWIGGFCVTGAAAHGAIFMVRDIRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRQDMFSDTAIQLQPIFAQWIQ   [280]
'Erythrotrichia carnea [gi|22022429|gb|AY119703.1|]'       IFSAHFSIIFLWISGMHFHGARFSNYTAWLSNPPSAQVVWPIVGQEILNQVTSGWFQMWRASGITTETQLYATAIGGLVMSGLMLWAGWFHYHKAHHLAGLLGLGCLSWSGHQIHISLPINKLLDAGIPLPHEFILNPVTGGLWLSDTAHHHLASWHAQLAINLAMMGSLSIIVAHHMYAMPPYPYIATDYPTQLSLFTHHVWIGGFCIVGAAAHGAIFMIRDIRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRQDMFSDTAIQLQPVFAQWVQ   [280]
'Dixonielloa grisea [gi|22022427|gb|AY119702.1|]'          IFSAHFAIIFLWLSGMYSHGARFSNYVAWLSNPPSAQIVWPVVGQEVLNQITSGFFQLWRASGITNESQLYATAFGGLLTSGLMLFAGWFHYHKYHHLAGLLGLGCLSWAGHQIHVSLPINKLLDAGVPLPHEFLLNPVTGGLWLSDTAHHHLASWHAQLAINLAFMGSLSIIVAHHMYAMPPYPYIATDYPTQLSLFTHHVWIGGFCIVGAGAHAAIFMVRDIRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRQDMFSDTAVSLQPIFAQWIQ   [280]
'Rhodella violacea [gi|22022435|gb|AY119706.1|]'           IFSAHFSIIFLWLSGMYFHGARFSNYVAWLSNPPSAQVVWPIVGQEILNQITSGFFQLWRASGITNETELYATALGGLVMSGLMLFAGWFHYHKAHHLAGLLGLGCLSWSGHQIHISLPINKLLDAGVPLPHEFLLNPVTGGLWLSDTAHHHLASWHAQLAINLAMMGSLSIIVAHHMYAMPPYPYIATDYPTQLSLFTHHMWIGGFCVVGAGAHASIFMVRDIRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRQDMFSDTAIQLQPIFAQWIQ   [280]
'Porphyra purpurea [gi|11465652|ref|NC 000925.1|]'         IFSAHFAVIFLWLSGMYFHGARFSNYVAWLSNPPSAQVVWPIVGQEILNQVTSGWFQLWRASGITTEFQLYCTAIGGLGMAALMLFAGWFHYHKAHHLAGLLGLGCLGWAGHQIHLSLPINKLLDSGVPLPHEFLLNPVTGGLWLSDTAHHHLASWHAQLAINLAMMGSLSIIVAHHMYAMPPYPYIATDYPTQLSLFTHHMWIGGFCVVGAGAHASIFMVRDIRHRDAIVSHLNWVCIFLGFHSFGLYIHNDTMRALGRQDMFSDTAIQLQPIFAQWVQ   [280]
'Cyanidium caldarium [gi|11465393|ref|NC 001840.1|]'       IFSAHFSLIFIWLSGMYFHGARFSNYTIWLSNPPSAQIVWPIVGQEILNQITSGFFHLWRASGITNELELYVTALGGLFMAGLMAFGGWFHYHKAHHLAGLLGLGSLSWAGHQIHVSLPINKLLDAGVPLPHEFILNPITGSLWMSDIAHHHLASWHANLAINLALFGSLSIIVAHHMYAMPPYPYISIDYPTQLSLFTHHTWIGGFCIVGASAHGAIFMIRDIRHRDALISHLNWVCIFLGTHSFGLYIHNDTMRALGRQDMFSDTAIQLQPIFAQWIQ   [280]
'Cyanophora paradoxa [gi|11467282|ref|NC 001675.1|]'       IFSAHFAVVFIWLSGAYFHGARFSNYEAWLSNPPSAQVVWPIVGQEILNQITSGLFQMWRASGITTELQLYVTAIGALVMAALMLFAGWFHYHKAHHLAGLFGLGSLSWAGHQIHVSLPVNKLLDSGVPLPHEFILNPVTGGLWLSDRAHHHLASWHAQLSLNLALFGSLSIIVAHHMYSMPPYPYLATDYATSLCLFTHHVWIGGFLIVGAGAHAAIFMVRDLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRQDMFSDAAIQLQPVFAQWVQ   [280]
'Pylaiella littoralis [gi|22022471|gb|AY119724.1|]'        IFSAHFSIIFLWISGMHFHGAYFSNYLAWLNNPPSAQIVWPIVGQEILNQITSGFFQLWRAEGITSEIELYWTAIGGLIMSGLMLFGGWFHYHKAHHLSGLLGLGCLAWSGHQIHVALPINKLLDAGVPLPYEFILNPVTGGLWLSDTAHHHLASWHAQLAINLAMMGSLSIIVAHHMYAMPPYPYIATDYATQLSLFTHHMWIGGFCVVGGAAHGAIFMVRDVRHRDSIISHLNWVCIFLGFHSFGLYIHNDTMRALGRSDMFSDTGIPLKPIFAQGIQ   [280]
'Odontella sinensis [gi|11467432|ref|NC 001713.1|]'        IFSAHFAVIFLWISGMHFHGAYFSNYSAWLSDPQSSQVVWPIVGQEILNQTTSGWFQMWRAEGITSEVELYWIAIGGLIMSALMLFAGWFHYHKAHHLAGLLGLGCLSWSGHQIHIALPINKLLDAGVPLPHEFLLNPVTGGLWLSDIAHHHLASWHAQLAINLAMMGSLSIIVAHHMYAMPPYPYIATDYATQLSLFTHHMWIGGFCVVGGAAHGAIFMVRDLRHRDAIISHLNWVCIFLGCHSFGLYIHNDTMRALGRQDMFSDKAIQLQPIFAQWVQ   [280]
'Amphidinium operculatum [gi|7019702|emb|AJ250264.1|]'     ANLAHIGVVFIWLSGMHFHGAYFSNYLDWLQDPPTAQQVSNIANQSVLNRVTSGFFNLWLAEGITSTYQLKVIAAFGLIASALCFLGSYFHMHSSHHLVGLLGLGSLAWAGHLIHISLPVNILLNAGVPSPHSLLLTSSDGYVWQPLVAMHHFASWHLVLGVQLFVTGTASVLYAQMSNAYPVYPYLLTDHPTVVSLFVHHMWIGGFFLVGAFAHLSIGLVRDLTQRDIILGHLTWVVAFLGVHSFGLYVHNDTMQALGRDDMFSDNAISLLPVFARWST   [280]
'Heterocapsa triquetra [gi|5532295|gb|AF130031.1|]'        SGLAHFSIVFFWLGGMHFHGAYFSNYSAWLKDPPGSQLVWSLVGQDILNRVTSGFFQLWRAEGIVTQVHLKYAAAAALIGSIATLWAAYFHMHISGQLAILAGLGSISWAGHQIHIALPINRLLDSGVPSPQDLLLNPSTGSIYLGQIASHHFFSWHSRLSINLAIAGSLSITFAHHIYAMPVYPFCGSDYATVLSLFVHHMWIGGFFIVGAGAHASIFMIRDLAHRDIIMGHLIYVTIALGMHAFGIYIHNDTLQALGREDIFSDNSIQLKPLFAVWVQ   [280]
;
END;


BEGIN CODONS;
	CODESET * UNTITLED = Universal: all ;
END;


BEGIN SETS;
	TAXSET  Short_seq  = ;
	TAXSET  representatives  =  1-14;
	TAXSET  'rep+fuc-dino'  =  1-14;
	TAXSET  'rep+per&fuc-dinos'  =  1-16;
	TAXSET  'rep+per-dinos'  =  1-16;
END;


BEGIN ASSUMPTIONS;
	OPTIONS  DEFTYPE=unord PolyTcount=MINSTEPS ;
END;


BEGIN MacClade;
	Version 4.0  75;
	LastModified -1155397380;
	FileSettings editor  '0' '0' '1' '1';
	Singles 100;
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	Salmo 00000001;
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	Calculations 0000001;
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	Charts  Geneva '9' (normal) 0010;
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