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Evidence for a New Root of the Tree of Life
James A. Lake, Jacqueline A. Servin, Craig W. Herbold, and Ryan G. Skophammer
doi:10.1080/10635150802555933
Supplementary analyses and data
The Impact of Reticulate Evolution on Genome Phylogeny
Robert G. Beiko, W. Ford Doolittle, and Robert L. Charlebois
doi:10.1080/10635150802559265
EvolSimConfig
nBLAST trees
Supplementary figure
Supplementary figure legend
Phylogeny of the Beaked Whale Genus Mesoplodon (Ziphiidae: Cetacea) Revealed by Nuclear Introns: Implications for the Evolution of Male Tusks
Merel L. Dalebout, Debbie Steel, and C. Scott Baker
doi:10.1080/10635150802559257
Data file
The Modified Gap Excess Ratio (GER*) and the Stratigraphic Congruence of Dinosaur Phylogenies
Matthew A. Wills, Paul M. Barrett, and Julia F. Heathcote
doi:10.1080/10635150802570809
Appendix
The Influence of Model Averaging on Clade Posteriors: An Example Using the Triggerfishes (Family Balistidae)
Alex Dornburg, Francesco Santini, and Michael E. Alfaro
doi:10.1080/10635150802562392
Appendix
Resolving Arthropod Phylogeny: Exploring Phylogenetic Signal within 41 kb of Protein-Coding Nuclear Gene Sequence
Jerome C. Regier, Jeffrey W. Shultz, Austen R. D. Ganley, April Hussey, Diane Shi, Bernard Ball, Andreas Zwick, Jason E. Stajich, Michael P. Cummings, Joel W. Martin, and Clifford W. Cunningham
doi:10.1080/10635150802570791
Primers and amplification strategies
Laboratory methods
GenBank accession numbers
Data set
Data set
Perl Script for Character Coding
Filtered Z-Closure Supernetworks for Extracting and Visualizing Recurrent Signal from Incongruent Gene Trees
James B. Whitfield, Sydney A. Cameron, Daniel H. Huson, and Mike A. Steel
doi:10.1080/10635150802552849
Bee trees
Wasp trees
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