Society of Systematic Biologists

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Phylogenomic Analysis of the L1 Retrotransposons in Deuterostomia
Dušsan Kordiš; Nika Lovšin; Franc Gubenšek
doi:10.1080/10635150601052637
L1 group A families in Deuterostomia
Supplementary tables

Phylogenomic Investigation of CR1 LINE Diversity in Reptiles
Andrew M. Shedlock
doi:10.1080/10635150601091924
Supplementary material

Extensive Morphological Convergence and Rapid Radiation in the Evolutionary History of the Family Geoemydidae (Old World Pond Turtles) Revealed by SINE Insertion Analysis
Takeshi Sasaki; Yuichirou Yasukawa; Kazuhiko Takahashi; Seiko Miura; Andrew M. Shedlock; Norihiro Okada
doi:10.1080/10635150601058014
Supplementary figures

Automated Scanning for Phylogenetically Informative Transposed Elements in Rodents
Astrid Farwick; Ursula Jordan; Georg Fuellen; Dorothée Huchon; François CATZEFLIS; Jürgen Brosius; Jürgen Schmitz
doi:10.1080/10635150601064806
Oligonucleotides used for PCR Amplification
Mouse Genomic Location of SINE-Loci
"Species-specific" SINE-insertions
Alignment in FASTA format
Supplemental Figure S-1

Short Interspersed Elements (SINEs) in Plants: Origin, Classification, and Use as Phylogenetic Markers
Jean-Marc Deragon; Xiaoyu Zhang
doi:10.1080/10635150601047843
Consensus Sequences of SINE Families

Nematode Small Subunit Phylogeny Correlates with Alignment Parameters
Ashleigh B. Smythe; Michael J. Sanderson; Steven A. Nadler
doi:10.1080/10635150601089001
Alignments
Python scripts