Society of Systematic Biologists

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Data sets and supplementary material for articles this issue can be downloaded here. Files are (typically) in NEXUS, Word, or HTML formats. Note that the authors may also have deposited their data in GenBank and TreeBASE, or have additional data on their own web sites.

Tenrec Phylogeny and the Noninvasive Extraction of Nuclear DNA
Robert J. Asher and Michael Hofreiter
doi:10.1080/10635150500433649
Guide to zipped data files
zipped data: combined and partitions
morphological data characters
supplemental tables

Computing Bayes Factors Using Thermodynamic Integration
Nicolas Lartillot and Hervé Philippe
doi:10.1080/10635150500433722
data
source code

Molecular Phylogenetic Analyses Indicate Multiple Independent Emergences of Parasitism in Myzostomida (Protostomia)
Deborah Lanterbecq, Greg W. Rouse, Michel C. Milinkovitch, Igor Eeckhaut
doi:10.1080/10635150500481317
Ap1: ML reconstruction tree
Ap2: Host Preference tree
Mesquite data
Myzos + Outgroup data
Myzostomids data

Arrival and Diversification of Caviomorph Rodents and Platyrrhine Primates in South America
Céline Poux, Pascale Chevret, Dorothée Huchon, Wilfried W. de Jong, Emmanuel J. P. Douzery
doi:10.1080/10635150500481390
data

How Can Third Codon Positions Outperform First and Second Codon Positions in Phylogenetic Inference? An Empirical Example from the Seed Plants
Mark P. Simmons, Li-Bing Zhang, Colleen T. Webb, Aaron Reeves
doi:10.1080/10635150500481473
character state data
raw PEST data
summarized data

Inferring Complex DNA Substitution Processes on Phylogenies Using Uniformization and Data Augmentation
Ligia Mateiu and Bruce Rannala
doi:10.1080/10635150500541599
data

Fast Computation of Supertrees for Compatible Phylogenies with Nested Taxa
Vincent Berry and Charles Semple
doi:10.1080/10635150500541649
source trees
supertree

Evolutionary Rates, Divergence Dates, and the Performance of Mitochondrial Genes in Bayesian Phylogenetic Analysis
Rachel Lockridge Mueller
doi:10.1080/10635150500541672
data

Ancestral State Reconstruction of Body Size in the Caniformia (Carnivora, Mammalia): The Effects of Incorporating Data from the Fossil Record
John A. Finarelli and John J. Flynn
doi:10.1080/10635150500541698
appendix (doc)
appendix (xls)

Multiple Sequence Alignment Accuracy and Phylogenetic Inference
T. Heath Ogden and Michael S. Rosenberg
doi:10.1080/10635150500541730
appendix

Utility of Nuclear Allele Networks for the Analysis of Closely Related Species in the Genus Carabus, Subgenus Ohomopterus
Teiji Sota and Masataka Sasabe
doi:10.1080/10635150500541607
data