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September 8, 2010

03:18
Open Conservation Biologist/Director Position The University of California, Los Angeles (UCLA) Department of Ecology and Evolutionary Biology and Institute of the Environment and Sustainability (IoES) seeks to fill a joint, open-rank (tenure track or tenured) faculty position in conservation biology. We are interested in all subfields within conservation biology but especially research utilizing approaches to address fundamental issues in the field. Candidates with strong interests in cross-disciplinary approaches to conservation science and climate change are especially encouraged to apply. The successful candidate is expected to establish a strong and externally funded research program and will assume faculty directorship of the recently established UCLA La Kretz Center for California Conservation Science. Applicants should submit application materials online to conservationbiologyposition[at]ioe.ucla.edu, including a cover letter, curriculum vitae, statements of research, teaching and interdisciplinary interests, and the names and contact information of four references by December 1, 2010. Please use job number: 0830-1011-01 in all correspondence. Additional information about the Institute and the Department may be found at www.environment.ucla.edu and www.eeb.ucla.edu, respectively. Inquiries regarding the position should be directed to Search Chair, Professor Thomas B. Smith (tbsmith[at]ucla.edu). As a campus with a diverse student body, individuals with a history of mentoring under-represented minorities in the sciences are encouraged to discuss their activities in their cover letter. Women and minority applicants are encouraged to apply. UCLA is an affirmative action/equal opportunity employer with a strong institutional commitment to the achievement of faculty and staff diversity. I look forward to finding out how we can post this open position on your site. Thanks in advance for your help with this. Sincerely yours, Karen A. Lefkowitz Communications Officer UCLA Institute of the Environment (310) 794-4908 http://www.environment.ucla.edu/ "Lefkowitz, Karen A."
03:18
The IBEST (Initiative for Bioinformatics and Evolutionary STudies) group at the University of Idaho is looking for a Director of IBEST Core Facilities. We have three cores: bioinformatics core, sequencing core, and imaging core. MAJOR FUNCTION: Management of IBEST research core facilities, which include the DNA Sequence Analysis Core, Bioinformatics Core, and Optical Imaging Core. This individual will provide strategic and technical management of core facilities and guidance to the core facility user community. Responsibilities include the development of procedures and policies of facility use, financial oversight of operations, employee supervision, and funding procurement activities. The director will ensure compliance with federal, state, and local agenci
03:18
--Boundary_(ID_sqJc0HRQV2rSKzabu4FlMQ) Content-type: text/plain; charset=windows-1252 Content-transfer-encoding: quoted-printable Dear all, We are glad to announce the release of *MetaPIGA2* (BMC Bioinformatics 2010, 11: 379), a robust implementation of the Metapopulation Genetic Algorithm (metaGA) for large phylogeny inference under Maximum Likelihood (PNAS, 99: 10516-10521 (2002)) In MetaPIGA2, the metaGA is implemented together with: -Complex substitution models (including GTR), -Discrete Gamma rate heterogeneity, -The possibility to partition data. Importantly, MetaPIGA2 will make you happy if you like using a graphical user interface (GUI) BUT it should also make you happy if you hate using a GUI. Indeed, MetaPIGA provides BOTH: -An extensive GUI for parameters setting, following run progress, and manipulating result trees, and -High customization through manual batch files and command line processing. Furthermore, if you need to use batch files (for example, to run them on a distant server) but hate to type the commands yourself, MetaPIGA2 allows you to generate batch files through the GUI. MetaPIGA2 also implements the Likelihood Ratio Test (LRT), the Akaike Information Criterion (AIC), and the Bayesian Information Criterion (BIC) for automated selection of substitution models that best fit the data ... such that you don't need using 3 softwares before starting analyze your data. MetaPIGA2 uses standard formats for data sets and trees, is platform independent, runs in 32 and 64-bits systems, and TAKES ADVANTAGE OF MULTIPROCESSOR & MULTICORE COMPUTERS. MetaPIGA2 is described in: Helaers & Milinkovitch; BMC Bioinformatics 2010, 11: 379 http://www.biomedcentral.com/content/pdf/1471-2105-11-379.pdf The metaGA algorithm is described in: Lemmon & Milinkovitch; PNAS, 99: 10516-10521 (2002): http://www.pnas.org/content/99/16/10516.full.pdf The software and its extensive manual are freely available to academics at http://www.metapiga.org. Best, Michel. PS: Note that we also implemented a Simulated Annealing algorithm and a classical Genetic Algorithm for those who want to play with other stochastic heuristics. -------------------------------------------------------------- Prof. Michel C. Milinkovitch Laboratory of Artificial & Natural Evolution Dept of Genetics & Evolution University of Geneva Sciences III, 30, Quai Ernest-Ansermet 1211 Gen趥 4, Switzerland Michel.Milinkovitch[at]unige.ch Tel +41(0)22 379 67 85 Fax +41(0)22 379 67 95 www.lanevol.org --------------------------------------------------------------- --Boundary_(ID_sqJc0HRQV2rSKzabu4FlMQ) Content-type: text/html; charset=windows-1252 Content-transfer-encoding: quoted-printable Dear all,
We are glad to announce the release of *MetaPIGA2* (BMC Bioinformatics 2010, 11: 379), a robust implementation of the Metapopulation Genetic Algorithm (metaGA) for large phylogeny inference under Maximum Likelihood (PNAS, 99: 10516-10521 (2002))
In MetaPIGA2, the metaGA is implemented together with:-Complex substitution models (including GTR),-Discrete Gamma rate heterogeneity, -The possibility to partition data. 
Importantly, MetaPIGA2 will make you happy if you like using a graphical user interface (GUI) BUT it should also make you happy if you hate using a GUI. Indeed, MetaPIGA provides BOTH:-An extensive GUI for parameters setting, following run progress, and manipulating result trees, and-High customization through manual batch files and command line processing.
Furthermore, if you need to use batch files (for example, to run them on a distant server) but hate to type the commands yourself, MetaPIGA2 allows you to generate batch files through the GUI.
MetaPIGA2 also implements the Likelihood Ratio Test (LRT), the Akaike Information Criterion (AIC), and the Bayesian Information Criterion (BIC) for automated selection of substitution models that best fit the data ... such that you don't need using 3 softwares before starting analyze your data.
MetaPIGA2 uses standard formats for data sets and trees, is platform independent, runs in 32 and 64-bits systems, and T AKES ADVANTAGE OF MULTIPROCESSOR & MULTICORE COMPUTERS.
MetaPIGA2 is described in: Helaers & Milinkovitch; BMC Bioinformatics 2010, 11: 379http://www.biomedcentral.com/content/pdf/1471-2105-11-379.pdf
The metaGA algorithm is described in: Lemmon & Milinkovitch; PNAS, 99: 10516-10521 (2002):http://www.pnas.org/content/99/16/10516.full.pdf
The software and its extensive manual are freely available to academics at
01:19
SYMPOSIUM: Genes & Environment: Finding the Missing Heritability of Complex Traits Stanford University, October 14 & 15, 2010 Generously supported by Society in Science, the Branco Weiss Fellowship - http://www.society-in-science.ethz.ch/ Public registration to attend this one and a half day symposium is now open at http://www.gxe2010.org - admission is FREE and will be handled on a "first come first serve" basis. Space is limited and pre-registration is required. Why is it that humans vary in their susceptibility to major diseases, such as cancer, depression, schizophrenia, and HIV/AIDS? What determines complex human traits? Is it genes, the environment, a combination of both, or something else? These questions lie at the heart of a debate that has been raging for decades, namely the nature vs. nurture debate. Modern technology has allowed us to dig deep into the genetic variation in human populations and associate that variation with traits of interest. However, the results of these so-called genome wide association studies (GWAS) have been sobering: While some traits are clearly associated with particular genetic variants, most variation in traits cannot be explained by variation in genes. This poses a paradox: Many traits cluster in families, but genetic variation seems to explain little variation. Where does the missing heritability come from? At Stanford University, 9 world-renowned experts on these questions and leaders in their fields will speak at the GxE 2010 symposium. At this one and a half day event, talks will be alternating with moderated discussion in a medium-sized setting that allows and fosters personal interactions. The speakers are, in alphabetical order: - Jeanne Brooks-Gunn, Virginia and Leonard Marx Professor of Child Development, Teachers College & College of Physicians and Surgeons, Columbia University - Steve Cole, Vice President, Research and Development, Hope Lab & Associate Professor of Medicine, University of California, Los Angeles - Marcus Feldman, Burnet C. and Mildred Finley Wohlford Professor of Biological Sciences & Director, Morrison Institute for Population and Resource Studies, Stanford University - James H. Fowler, Professor of Medical Genetics and Political Science, University of California, San Diego - David Goldstein, Professor of Molecular Genetics and Microbiology & Director, Center for Human Genome Variation, Duke University - Ahmad Hariri, Professor of Psychology and Neuroscience & Director, Laboratory of Neurogenetics, Duke University - Stephen Manuck, Distinguished University Professor of Health Psychology and Behavioral Medicine & Director, Initiative for Neurobehavioral Genetics, University of Pittsburgh - Eric Turkheimer, Professor, Department of Psychology & Director of Clinical Training, University of Virginia - Anne Wojcicki, co-founder, 23andMe More information about the symposium can be found online at http://www.gxe2010.org The organizers, Marcel Salath頦 George Slavich Genes & Environment 2010: Finding the Missing Heritability of Complex Traits October 14 & 15, 2010 Stanford University http://www.gxe2010.org Marcel Salath鬠PhD Assistant Professor of Biology and Society in Science: Branco Weiss Fellow CIDD - Center for Infectious Disease Dynamics The Pennsylvania State University 516 Mueller Laboratory University Park, PA, 16802 mobile: (408) 386-8916 work: (814) 867-4431 email: salathe[at]psu.edu web: salathegroup.com "salathe@psu.edu"
01:19
Organization: Florida State University Job Location: Tallahassee, FL Job Description: To join a laboratory group involved in developing genomic resources in amphibians, using enrichment procedures and high-throughput sequencing (i.e., Illumina). Researcher will perform bench-level molecular work to prepare samples for high-throughput sequencing, conduct microsatellite and SNP screening and genotyping, and develop novel applications for hybridization-based enrichment. Researcher will also assist with processing and analysis of genomic data (bioinformatics). Responsibilities will include: lab management, library preparation for sequencing (e.g., barcoded library preparation, etc.), genotyping and marker development (microsatellites and SNPs), sequence enrichment, and protocol development. Must have good troubleshooting skills, a strong background in molecular biology, experience in protocol development, good organization and leadership skills, and high efficiency. Extensive experience in collection and analysis of genomic data is also desirable. Must be able to take on a project and carry it out to completion. Start Date: flexible (early October preferred). Salary $30,000 to $45,000 per year, plus benefits, depending upon experience. Benefits Retirement, health, sick/annual/holiday leave, other benefits Characteristic Duties - Conducts various bench level experiments - Employs a variety of standard and non-standard molecular biology techniques to help develop protocols for library construction and sample preparation for next-generation sequencing - Prepares, orders, and maintains stocks of necessary reagents, solutions and supplies - Documents, compiles and analyzes experimental data - Provides advice to fellow lab members regarding laboratory techniques - Helps mentor undergraduate lab projects - Attends weekly meeting for experimental planning - Assists with organization of tissue collections and database - Maintains and improves technical knowledge base Essential requirements: (1) BS, MS, or PhD degree with either graduate experience or a minimum of two years of professional experience with genomic sequencing technologies and analysis. (2) Strong background in molecular biology techniques (e.g., extraction of RNA, DNA, real-time QPCR, sequencing) (3) Solid computer skills and good knowledge of public domain biological databases. Advanced computer skills (genomics data processing and analysis, databases, etc.) are preferred. (4) Excellent organizational, time management, and communication skills required; must be able to work independently, solve problems, and interact with lab members. Contact Information: alemmon[at]evotutor.org About Our Organization: The researcher selected will become part of the integrative laboratory groups of Alan Lemmon and Emily Moriarty Lemmon at Florida State University, in Tallahassee, Florida. For more information, see our websites: http://www.evotutor.org/LemmonLab/ http://www.bio.fsu.edu/chorusfrog/index.html http://www.bio.fsu.edu/faculty-moriarty-lemmon.php Alan R. Lemmon Assistant Professor Florida State University
01:19
Advanced Research Technician or Postdoctoral Researcher Organization: Florida State University Job Location: Tallahassee, FL Job Description: To join a laboratory group involved in developing genomic resources in amphibians, using enrichment procedures and high-throughput sequencing (i.e., Illumina). Researcher will perform bench-level molecular work to prepare samples for high-throughput sequencing, conduct microsatellite and SNP screening and genotyping, and develop novel applications for hybridization-based enrichment. Researcher will also assist with processing and analysis of genomic data (bioinformatics). Responsibilities will include: lab management, library preparation for sequencing (e.g., barcoded library preparation, etc.), genotyping and marker development (microsatellites and SNPs), sequence enrichment, and protocol development. Must have good troubleshooting skills, a strong background in molecular biology, experience in protocol development, good organization and leadership skills, and high efficiency. Extensive experience in collection and analysis of genomic data is also desirable. Must be able to take on a project and carry it out to completion. Start Date: flexible (early October preferred). Salary $30,000 to $45,000 per year, plus benefits, depending upon experience. Benefits Retirement, health, sick/annual/holiday leave, other benefits Characteristic Duties - Conducts various bench level experiments - Employs a variety of standard and non-standard molecular biology techniques to help develop protocols for library construction and sample preparation for next-generation sequencing - Prepares, orders, and maintains stocks of necessary reagents, solutions and supplies - Documents, compiles and analyzes experimental data - Provides advice to fellow lab members regarding laboratory techniques - Helps mentor undergraduate lab projects - Attends weekly meeting for experimental planning - Assists with organization of tissue collections and database - Maintains and improves technical knowledge base Essential requirements: (1) BS, MS, or PhD degree with either graduate experience or a minimum of two years of professional experience with genomic sequencing technologies and analysis. (2) Strong background in molecular biology techniques (e.g., extraction of RNA, DNA, real-time QPCR, sequencing) (3) Solid computer skills and good knowledge of public domain biological databases. Advanced computer skills (genomics data processing and analysis, databases, etc.) are preferred. (4) Excellent organizational, time management, and communication skills required; must be able to work independently, solve problems, and interact with lab members. Contact Information: alemmon[at]evotutor.org About Our Organization: The researcher selected will become part of the integrative laboratory groups of Alan Lemmon and Emily Moriarty Lemmon at Florida State University, in Tallahassee, Florida. For more information, see our websites: http://www.evotutor.org/LemmonLab/ http://www.bio.fsu.edu/chorusfrog/index.html http://www.bio.fsu.edu/faculty-moriarty-lemmon.php -- Alan R. Lemmon Assistant Professor Florida State University arlemmon[at]gmail.com
01:19
Dear colleagues, I would like to announce version 2 of LOSITAN, a free easy to use application based on the fdist (Beaumont and Nichols, 1996) Fst-outlier method to detect markers under selection. Version 2 features are: 1. Support for large datasets 2. Support for Windows 7 3. False Discovery Rates We are currently developing a similar free application for DOMINANT markers (AFLPs), if you are interested in using it during our beta test period, please contact us. Lositan can be found here: http://popgen.eu/soft/lositan/ LOSITAN tries to make selection detection feasible to a much wider range of users, even for large population genomic datasets, by both providing an easy to use interface and essential functionality to complete the whole selection detection process.The application runs directly from the web on Windows, Mac and Linux (only a recent Java installation is required). Best Regards, Tiago Antao tiagoantao[at]gmail.com

September 7, 2010

07:03
--Apple-Mail-543-614329028 Content-Type: text/plain; charset=US-ASCII; format=flowed; delsp=yes Content-Transfer-Encoding: 7bit Begin forwarded message: > From: evoldir[at]evol.biology.mcmaster.ca > Date: 6 September 2010 06:46:41 BST > To: r.page[at]bio.gla.ac.uk > Subject: Other: Software TREEFINDER Update? > Reply-To: brian[at]helix.biology.mcmaster.ca > > > > Dear Colleagues, > > It might be necessary to update my Treefinder software, to recompile > it > for newer computers and to develop newer installation procedures. I > could also implement deeper search levels and some other extensions. > But > so far the academic system has been unable to offer me some adequate > compensation for my work. My questions are: > > 1. Is there anybody interested in having updated Treefinder software? > > 2. If so, is there anybody willing and able to motivate me to do such > updates? > > According to my cultural background, an "adequate" compensation for > good > work would be something that enabled me to buy a nice house with a > garden and raise a big family HERE AT MY HOME PLACE. A traditional > permanent income. And I am not interested in working on somebody > else's > projects as long as I have more useful ideas of my own. > > But the acedemic system selects people who are good at doing what they > are told and good at migrating from place to place all the time. It > selects people who accept miserable salaries that neither allow > raising > a big family nor buying a nice house with a garden. The academic > system > produces too many professors and hardly any inventors, thinkers. In > the > academic system one hardly has any time to THINK. The academic system > discriminates against people like me. This raises further questions: > > 3. Is there any advantage in selecting cheap and flexible but possibly > incompetent scientists? > > 4. Is such an academic system useful? > > 5. If so, for whom? > > 6. If not, what are good strategies to get rid of such a system? > > 7. Do we need an alternative academic system that supports free > scientists with own ideas? > > I know that most of you are what the system has selected so far and > will > therefore agree with the established system in many aspects. Whereas > those who would not agree have already been excluded. But I > nevertheless > ask. > > The other point is that updating Treefinder requires several new > computers, compiler software, internet services etc. that I cannot > afford because somebody else gets my income. > > Gangolf Jobb > > > > Gangolf Jobb > > --------------------------------------------------------- Roderic Page Professor of Taxonomy Institute of Biodiversity, Animal Health and Comparative Medicine College of Medical, Veterinary and Life Sciences Graham Kerr Building University of Glasgow Glasgow G12 8QQ, UK Email: r.page[at]bio.gla.ac.uk Tel: +44 141 330 4778 Fax: +44 141 330 2792 AIM: rodpage1962[at]aim.com Facebook: http://www.facebook.com/profile.php?id=1112517192 Twitter: http://twitter.com/rdmpage Blog: http://iphylo.blogspot.com Home page: http://taxonomy.zoology.gla.ac.uk/rod/rod.html --Apple-Mail-543-614329028 Content-Type: text/html; charset=US-ASCII Content-Transfer-Encoding: quoted-printable

Begin = forwarded message:
From: = evoldir[at]evol.biology.mcma= ster.caDate: 6 September 2010 06:46:41 = BSTTo: r.page[at]bio.gla.ac.uk= Subject: = Other: Software TREEFINDER Update?Reply-To: = brian[at]helix.biology.mcmast= er.ca
=

Dear Colleagues,

It might be necessary to = update my Treefinder software, to recompile it
for newer computers = and to develop newer installation procedures. I
could also implement = deeper search levels and some other extensions. But
so far the = academic system has been unable to offer me some adequate =
compensation for my work. My questions are:

1. Is there = anybody interested in having updated Treefinder software?

2. If = so, is there anybody willing and able to motivate me to do such =
updates?

According to my cultural background, an "adequate" = compensation for good
work would be something that enabled me to buy = a nice house with a
garden and raise a big family HERE AT MY HOME = PLACE. A traditional
permanent income. And I am not interested in = working on somebody else's
projects as long as I have more useful = ideas of my own.

But the acedemic system selects people who are = good at doing what they
are told and good at migrating from place to = place all the time. It
selects people who accept miserable salaries = that neither allow raising
a big family nor buying a nice house with = a garden. The academic system
produces too many professors and = hardly any inventors, thinkers. In the
academic system one hardly = has any time to THINK. The academic system
discriminates against = people like me. This raises further questions:

3. Is there any = advantage in selecting cheap and flexible but possibly
incompetent = scientists?

4. Is such an academic system useful?

5. If = so, for whom?

6. If not, what are good strategies to get rid of = such a system?

7. Do we need an alternative academic system that = supports free
scientists with own ideas?

I know that most of = you are what the system has selected so far and will
therefore agree = with the established system in many aspects. Whereas
those who would = not agree have already been excluded. But I nevertheless =
ask.

The other point is that updating Treefinder requires = several new
computers, compiler software, internet services etc. = that I cannot
afford because somebody else gets my = income.

Gangolf Jobb



Gangolf Jobb http://www.fa= cebook.com/profile.php?id=3D1112517192Twitter: http://twitter.com/rdmpageBlog: http://iphylo.blogspot.comHome page: http://taxonomy.zoology.gla.ac.uk/rod/rod.html">http://taxonomy.zo= ology.gla.ac.uk/rod/rod.html

=




= --Apple-Mail-543-614329028--
07:03
--Apple-Mail-4-596866072 Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset=us-ascii I think there is a demand for these computationally oriented short = courses. Begin forwarded message: > From: evoldir[at]evol.biology.mcmaster.ca > Date: 7 September 2010 08:30:46 GMT+01:00 > To: b.mable[at]bio.gla.ac.uk > Subject: Course: Workshop on Molecular Evolution, Europe > Reply-To: mike[at]umiacs.umd.edu >=20 >=20 >=20 > --Apple-Mail-8-553692888 > Content-Transfer-Encoding: quoted-printable > Content-Type: text/plain; > charset=3Dus-ascii >=20 > Workshop on Molecular Evolution, Europe 2011 >=20 > Cesky Krumlov, Czech Republic >=20 > 23 January - 4 February 2011, individual research session 4 - 11 = February 2011 >=20 > Application Deadline: 1 October 2009 >=20 > http://www.molecularevolution.org/workshops/WME >=20 > Michael P. Cummings, Scott A. Handley and Naiara Rodriquez-Ezpeleta = Co-Directors >=20 > The Workshop consists of a series of lectures, demonstrations and = computer laboratories that cover various aspects of molecular evolution. = Faculty are chosen exclusively for their effectiveness in teaching = theory and practice in molecular evolution. Included among the faculty = are developers and other experts in the use of computer programs and = packages such as BLAST, BEAST, Clustal W and Clustal X, FASTA, FigTree, = Genealogical Sorting Index, GARLI, LAMARC, MAFFT, Migrate-N, MrBayes, = PAML, PAUP*, and SeaView who provide demonstrations and consultations. >=20 > The course is designed for established investigators, postdoctoral = scholars, and advanced graduate students with prior experience in = molecular evolution and related fields. Scientists with strong interests = in molecular evolution, phylogenetics, population genetics, and related = fields are encouraged to apply for admission. Scheduled lectures and = computer laboratories total ~90 hours of instruction. An optional = all-computer laboratory of 54+ hours of independent work with guidance = and consultation of some faculty and teaching assistants is offered = during the third week. Admission is limited and highly competitive, with = admissions decisions determined by an international committee. >=20 > Topics to be covered include: >=20 > - Protein evolution and database searching: protein sequence versus = protein structure; homology; mathematical, statistical, and theoretical = aspects of sequence database searches > - Phylogenetic analysis: theoretical, mathematical and statistical = bases; sampling properties of sequence data; Bayesian analysis; = hypothesis testing > - Maximum likelihood and Bayesian theory and practice in phylogenetics = and population genetics: coalescent theory; estimation of population = genetic parameters > - Molecular evolution integrated at organism and higher levels: = population biology; biogeography; ecology; systematics and conservation; = population genetics > - Detecting positive selection: theory and practice; codon models > - Dating phylogenies: theory and practice > - Molecular evolution of recently diverged species >=20 > 2011 Fee: 1800 USD, plus an additional 750 USD for the highly = recommended, but optional, third week of all-computer laboratory for = work on your own data with guidance and consultation of some faculty and = teaching assistants. Fees include opening reception and mid-course = dinner, but do not include other meals or housing. Special discounted = pricing has been arranged for hotels, pensions and hostels. >=20 > For more information and online application see the Workshop web site = - >=20 > http://www.molecularevolution.org/workshops/WME >=20 > The Workshop on Comparative Genomics is also being offered immediately = before the Workshop on Molecular Evolution, see = http://www.molecularevolution.org/workshops/WCG >=20 >=20 > -- > Michael P. Cummings, PhD > Center for Bioinformatics and Computational Biology > Biomolecular Sciences Building > University of Maryland > College Park, MD 20742 > USA > mike[at]umiacs.umd.edu > phone: +1.301.405.9903 > fax: +1.301.314.1341 > http://serine.umiacs.umd.edu >=20 >=20 >=20 >=20 >=20 > --Apple-Mail-8-553692888 > Content-Transfer-Encoding: quoted-printable > Content-Type: text/html; > charset=3Dus-ascii >=20 > Workshop on Molecular Evolution, Europe 2011

Cesky Krumlov, = Czech Republic

23 January - 4 February 2011, individual research = session 4 - 11 February 2011

Application Deadline: 1 October = 2009

http://www.molecularevolution.org/workshops/WME">http://www.molecu= larevolution.org/workshops/WME

Michael P. Cummings, Scott A. = Handley and Naiara Rodriquez-Ezpeleta Co-Directors

The = Workshop consists of a series of lectures, demonstrations and = computer laboratories that cover various aspects of molecular = evolution. Faculty are chosen exclusively for their effectiveness = in teaching theory and practice in molecular evolution. Included = among the faculty are developers and other experts in the use of = computer programs and packages such as BLAST, BEAST, Clustal W and = Clustal=20 > X, FASTA, FigTree, Genealogical Sorting Index, GARLI, LAMARC, = MAFFT, Migrate-N, MrBayes, PAML, PAUP*, and SeaView who provide = demonstrations and consultations.

The course is designed for = established investigators, postdoctoral scholars, and advanced = graduate students with prior experience in molecular evolution and = related fields. Scientists with strong interests in molecular = evolution, phylogenetics, population genetics, and related fields = are encouraged to apply for admission. Scheduled lectures and = computer laboratories total ~90 hours of instruction. An optional = all-computer laboratory of 54+ hours of independent work = with guidance and consultation of some faculty and teaching = assistants is offered during the third week. Admission is limited = and highly competitive, with admissions decisions determined by an = international committee.

Topics to be covered = include:

- Protein evolution and d > atabase searching: protein sequence versus protein structure; = homology; mathematical, statistical, and theoretical aspects of = sequence database searches
- Phylogenetic analysis: theoretical, = mathematical and statistical bases; sampling properties of sequence = data; Bayesian analysis; hypothesis testing
- Maximum likelihood = and Bayesian theory and practice in phylogenetics and population = genetics: coalescent theory; estimation of population genetic = parameters
- Molecular evolution integrated at organism and higher = levels: population biology; biogeography; ecology; systematics and = conservation; population genetics
- Detecting positive selection: = theory and practice; codon models- Dating phylogenies: theory = and practice
- Molecular evolution of recently diverged = species

2011 Fee: 1800 USD, plus an additional 750 USD for the = highly recommended, but optional, third week of all-computer = laboratory for work on your=20 > own data with guidance and consultation of some faculty and = teaching assistants. Fees include opening reception and = mid-course dinner, but do not include other meals or housing. = Special discounted pricing has been arranged for hotels, pensions and = hostels.

For more information and online application see the = Workshop web site -

http://www.molecularevolution.org/workshops/WME">http://www.molecu= larevolution.org/workshops/WME

The Workshop on Comparative = Genomics is also being offered immediately before the Workshop on = Molecular Evolution, see http://www.molecularevolution.org/workshops/WCG">http://www.molecu= larevolution.org/workshops/WCG


> effect: none; -webkit-text-size-adjust: auto; = -webkit-text-stroke-width: 0px; ">--Michael P. Cummings, PhDCenter for = Bioinformatics and Computational BiologyBiomolecular Sciences = BuildingUniversity of MarylandCollege Park, MD = 20742USAmike[at]umiacs.umd.eduphon= e: +1.301.405.9903fax: +1.301.314.1341http://serine.umiacs.umd.edu


> >
> --Apple-Mail-8-553692888-- >=20 Dr. Barbara Mable Rm 404 Graham Kerr Building Institute of Biodiversity, Animal Health and Comparative Medicine College of Medical, Veterinary & Life Sciences University of Glasgow Glasgow, Scotland G12 8QQ Email: barbara.mable[at]glasgow.ac.uk Phone: +44 (0)141 330 3532 Fax: +44 (0)141 330 5971 --Apple-Mail-4-596866072 Content-Transfer-Encoding: quoted-printable Content-Type: text/html; charset=us-ascii I = think there is a demand for these computationally oriented short = courses.

Begin forwarded = message:
From: evoldir[at]evol.biology.mcma= ster.ca
Date: 7 September 2010 08:30:46 = GMT+01:00
To: b.mable[at]bio.gla.ac.uk
= Subject: Course: Workshop = on Molecular Evolution, Europe
Reply-To: mike[at]umiacs.umd.edu



--Apple-Mail-8-553692888
Content-Transfer-Encoding: = quoted-printable
Content-Type: text/plain;
= charset=3Dus-ascii

Workshop on Molecular Evolution, Europe = 2011

Cesky Krumlov, Czech Republic

23 January - 4 February = 2011, individual research session 4 - 11 February = 2011

Application Deadline: 1 October 2009

http://www.molecularevolution.org/workshops/WME">http://www.molecu= larevolution.org/workshops/WME

Michael P. Cummings, Scott A. = Handley and Naiara Rodriquez-Ezpeleta Co-Directors

The Workshop = consists of a series of lectures, demonstrations and computer = laboratories that cover various aspects of molecular evolution. Faculty = are chosen exclusively for their effectiveness in teaching theory and = practice in molecular evolution. Included among the faculty are = developers and other experts in the use of computer programs and = packages such as BLAST, BEAST, Clustal W and Clustal X, FASTA, FigTree, = Genealogical Sorting Index, GARLI, LAMARC, MAFFT, Migrate-N, MrBayes, = PAML, PAUP*, and SeaView who provide demonstrations and = consultations.

The course is designed for established = investigators, postdoctoral scholars, and advanced graduate students = with prior experience in molecular evolution and related fields. = Scientists with strong interests in molecular evolution, phylogenetics, = population genetics, and related fields are encouraged to apply for = admission. Scheduled lectures and computer laboratories total ~90 hours = of instruction. An optional all-computer laboratory of 54+ hours of = independent work with guidance and consultation of some faculty and = teaching assistants is offered during the third week. Admission is = limited and highly competitive, with admissions decisions determined by = an international committee.

Topics to be covered = include:

- Protein evolution and database searching: protein = sequence versus protein structure; homology; mathematical, statistical, = and theoretical aspects of sequence database searches
- Phylogenetic = analysis: theoretical, mathematical and statistical bases; sampling = properties of sequence data; Bayesian analysis; hypothesis testing
- = Maximum likelihood and Bayesian theory and practice in phylogenetics and = population genetics: coalescent theory; estimation of population genetic = parameters
- Molecular evolution integrated at organism and higher = levels: population biology; biogeography; ecology; systematics and = conservation; population genetics
- Detecting positive selection: = theory and practice; codon models
- Dating phylogenies: theory and = practice
- Molecular evolution of recently diverged = species

2011 Fee: 1800 USD, plus an additional 750 USD for the = highly recommended, but optional, third week of all-computer laboratory = for work on your own data with guidance and consultation of some faculty = and teaching assistants. Fees include opening reception and mid-course = dinner, but do not include other meals or housing. Special discounted = pricing has been arranged for hotels, pensions and hostels.

For = more information and online application see the Workshop web site = -

http://www.molecularevolution.org/workshops/WME

The
= Workshop on Comparative Genomics is also being offered immediately = before the Workshop on Molecular Evolution, see = http://www.molecularevolution.org/workshops/WCG


--
Michael
= P. Cummings, PhD
Center for Bioinformatics and Computational = Biology
Biomolecular Sciences Building
University of = Maryland
College Park, MD = 20742
USA
mike[at]umiacs.umd.edu
phone: +1.301.405.9903
fax: = +1.301.314.1341
http://serine.umiacs.umd.edu





--A
= pple-Mail-8-553692888
Content-Transfer-Encoding: = quoted-printable
Content-Type: text/html;
= charset=3Dus-ascii

Workshop on Molecular = Evolution, Europe 2011

Cesky Krumlov, Czech = Republic

23 January - 4 February 2011, individual = research session 4 - 11 February = 2011

Application Deadline: 1 October = 2009

http://www.molecularevolution.org/workshops/WME">http://www.mol= ecularevolution.org/workshops/WME

Michael = P. Cummings, Scott A. Handley and Naiara = Rodriquez-Ezpeleta Co-Directors

The = Workshop consists of a series of lectures, demonstrations and = computer laboratories that cover various aspects of molecular = evolution. Faculty are chosen exclusively for their = effectiveness in teaching theory and practice in molecular = evolution. Included among the faculty are developers and other = experts in the use of computer programs and packages such as = BLAST, BEAST, Clustal W and Clustal
X, FASTA, FigTree, = Genealogical Sorting Index, GARLI, LAMARC, MAFFT, = Migrate-N, MrBayes, PAML, PAUP*, and SeaView who provide = demonstrations and consultations.

The course = is designed for established investigators, = postdoctoral scholars, and advanced graduate students with = prior experience in molecular evolution and related fields. = Scientists with strong interests in molecular evolution, = phylogenetics, population genetics, and related fields are = encouraged to apply for admission. Scheduled lectures and = computer laboratories total ~90 hours of instruction. = An optional all-computer laboratory of 54+ hours of independent = work with guidance and consultation of some faculty and = teaching assistants is offered during the third week. Admission = is limited and highly competitive, with admissions decisions = determined by an = international committee.

Topics to be = covered include:

- Protein evolution and d
= atabase searching: protein sequence versus protein structure; = homology; mathematical, statistical, and theoretical aspects of = sequence database searches
- Phylogenetic analysis: = theoretical, mathematical and statistical bases; sampling properties of = sequence data; Bayesian analysis; hypothesis testing
- = Maximum likelihood and Bayesian theory and practice in phylogenetics = and population genetics: coalescent theory; estimation of = population genetic parameters
- Molecular evolution integrated = at organism and higher levels: population biology; = biogeography; ecology; systematics and conservation; population = genetics
- Detecting positive selection: theory and practice; = codon models- Dating phylogenies: theory and = practice
- Molecular evolution of recently diverged = species

2011 Fee: 1800 USD, plus an additional 750 = USD for the highly recommended, but optional, third week of = all-computer laboratory for work on your
own data with guidance and = consultation of some faculty and teaching assistants. Fees = include opening reception and mid-course dinner, but do not = include other meals or housing. Special discounted pricing has been = arranged for hotels, pensions and hostels.

For more = information and online application see the Workshop web site = -

http://www.molecularevolution.org/workshops/WME">http://www.mol= ecularevolution.org/workshops/WME

The = Workshop on Comparative Genomics is also being offered = immediately before the Workshop on Molecular Evolution, = see http://www.molecularevolution.org/workshops/WCG">http://www.mol= ecularevolution.org/workshops/WCG

=
&= lt;/div>
--Michael P. Cummings, = PhDCenter for Bioinformatics and Computational = BiologyBiomolecular Sciences = BuildingUniversity of = MarylandCollege Park, MD = 20742USAmike[at]umiacs.umd.eduphone: +1.301.405.9903fax: = +1.301.314.1341http://serine.umiacs.umd.edu">http://serine.umiacs.umd.edu<;/= a>
=





--Apple-Mail-8-553692888--


Dr. Barbara MableRm 404 Graham = Kerr BuildingInstitute of Biodiversity, Animal Health and = Comparative MedicineCollege of Medical, Veterinary & Life = SciencesUniversity of GlasgowGlasgow, = ScotlandG12 8QQEmail: barbara.mable[at]glasgow.ac.ukPhone: +44 (0)141 330 3532Fax: +44 (0)141 330 = 5971
= --Apple-Mail-4-596866072--
06:48
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--Apple-Mail-8-553692888 Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset=us-ascii Workshop on Molecular Evolution, Europe 2011 Cesky Krumlov, Czech Republic 23 January - 4 February 2011, individual research session 4 - 11 February 2011 Application Deadline: 1 October 2009 http://www.molecularevolution.org/workshops/WME Michael P. Cummings, Scott A. Handley and Naiara Rodriquez-Ezpeleta Co-Directors The Workshop consists of a series of lectures, demonstrations and computer laboratories that cover various aspects of molecular evolution. Faculty are chosen exclusively for their effectiveness in teaching theory and practice in molecular evolution. Included among the faculty are developers and other experts in the use of computer programs and packages such as BLAST, BEAST, Clustal W and Clustal X, FASTA, FigTree, Genealogical Sorting Index, GARLI, LAMARC, MAFFT, Migrate-N, MrBayes, PAML, PAUP*, and SeaView who provide demonstrations and consultations. The course is designed for established investigators, postdoctoral scholars, and advanced graduate students with prior experience in molecular evolution and related fields. Scientists with strong interests in molecular evolution, phylogenetics, population genetics, and related fields are encouraged to apply for admission. Scheduled lectures and computer laboratories total ~90 hours of instruction. An optional all-computer laboratory of 54+ hours of independent work with guidance and consultation of some faculty and teaching assistants is offered during the third week. Admission is limited and highly competitive, with admissions decisions determined by an international committee. Topics to be covered include: - Protein evolution and database searching: protein sequence versus protein structure; homology; mathematical, statistical, and theoretical aspects of sequence database searches - Phylogenetic analysis: theoretical, mathematical and statistical bases; sampling properties of sequence data; Bayesian analysis; hypothesis testing - Maximum likelihood and Bayesian theory and practice in phylogenetics and population genetics: coalescent theory; estimation of population genetic parameters - Molecular evolution integrated at organism and higher levels: population biology; biogeography; ecology; systematics and conservation; population genetics - Detecting positive selection: theory and practice; codon models - Dating phylogenies: theory and practice - Molecular evolution of recently diverged species 2011 Fee: 1800 USD, plus an additional 750 USD for the highly recommended, but optional, third week of all-computer laboratory for work on your own data with guidance and consultation of some faculty and teaching assistants. Fees include opening reception and mid-course dinner, but do not include other meals or housing. Special discounted pricing has been arranged for hotels, pensions and hostels. For more information and online application see the Workshop web site - http://www.molecularevolution.org/workshops/WME The Workshop on Comparative Genomics is also being offered immediately before the Workshop on Molecular Evolution, see http://www.molecularevolution.org/workshops/WCG -- Michael P. Cummings, PhD Center for Bioinformatics and Computational Biology Biomolecular Sciences Building University of Maryland College Park, MD 20742 USA mike[at]umiacs.umd.edu phone: +1.301.405.9903 fax: +1.301.314.1341 http://serine.umiacs.umd.edu --Apple-Mail-8-553692888 Content-Transfer-Encoding: quoted-printable Content-Type: text/html; charset=us-ascii Workshop on Molecular Evolution, Europe 2011

Cesky Krumlov, Czech Republic

23 January - 4 February 2011, individual research session 4 - 11 February 2011

Application Deadline: 1 October 2009

http://www.molecularevolution.org/workshops/WME">http://www.molecularevolution.org/workshops/WME

Michael P. Cummings, Scott A. Handley and Naiara Rodriquez-Ezpeleta Co-Directors

The Workshop consists of a series of lectures, demonstrations and computer laboratories that cover various aspects of molecular evolution. Faculty are chosen exclusively for their effectiveness in teaching theory and practice in molecular evolution. Included among the faculty are developers and other experts in the use of computer programs and packages such as BLAST, BEAST, Clustal W and Clustal X, FASTA, FigTree, Genealogical Sorting Index, GARLI, LAMARC, MAFFT, Migrate-N, MrBayes, PAML, PAUP*, and SeaView who provide demonstrations and consultations.

The course is designed for established investigators, postdoctoral scholars, and advanced graduate students with prior experience in molecular evolution and related fields. Scientists with strong interests in molecular evolution, phylogenetics, population genetics, and related fields are encouraged to apply for admission. Scheduled lectures and computer laboratories total ~90 hours of instruction. An optional all-computer laboratory of 54+ hours of independent work with guidance and consultation of some faculty and teaching assistants is offered during the third week. Admission is limited and highly competitive, with admissions decisions determined by an international committee.

Topics to be covered include:

- Protein evolution and d atabase searching: protein sequence versus protein structure; homology; mathematical, statistical, and theoretical aspects of sequence database searches
- Phylogenetic analysis: theoretical, mathematical and statistical bases; sampling properties of sequence data; Bayesian analysis; hypothesis testing
- Maximum likelihood and Bayesian theory and practice in phylogenetics and population genetics: coalescent theory; estimation of population genetic parameters
- Molecular evolution integrated at organism and higher levels: population biology; biogeography; ecology; systematics and conservation; population genetics
- Detecting positive selection: theory and practice; codon models- Dating phylogenies: theory and practice
- Molecular evolution of recently diverged species

2011 Fee: 1800 USD, plus an additional 750 USD for the highly recommended, but optional, third week of all-computer laboratory for work on your own data with guidance and consultation of some faculty and teaching assistants. Fees include opening reception and mid-course dinner, but do not include other meals or housing. Special discounted pricing has been arranged for hotels, pensions and hostels.

For more information and online application see the Workshop web site -

http://www.molecularevolution.org/workshops/WME

The Workshop on Comparative Genomics is also being offered immediately before the Workshop on Molecular Evolution, see http://www.molecularevolution.org/workshops/WCG


--Michael P. Cummings, PhDCenter for Bioinformatics and Computational BiologyBiomolecular Sciences BuildingUniversity of MarylandCollege Park, MD 20742USAmike[at]umiacs.umd.eduphone: +1.301.405.9903fax: +1.301.314.1341http://serine.umiacs.umd.edu



--Apple-Mail-8-553692888--
01:51
This is a multi-part message in MIME format. ------=OPENWEBMAIL_ATT_0.48990261519096 Content-Type: text/plain; charset=utf-8 Dear colleagues, The European Research Networking Programme "Frontiers of Speciation Research", supported by 18 National Funding Organizations in member countries of the European Science Foundation, is inviting applications for travel grants intended to foster collaborations between European researchers working on topics related to the Programme. Support is available for short visits (up to 2 weeks) and exchange grants (up to 3 months), with preference given to junior researchers at a graduate or postdoctoral level. Applicants will want to keep in mind that, owing to the difference in costs, applications for short visits are more likely to be successful than applications for exchange grants.  Applications are reviewed quarterly after a submission deadline of 24:00 CET on 15 March, 15 June, 15 September, and 15 December. About 4-6 weeks after each deadline, the ESF will inform applicants about the outcome of evaluations. Further information and instructions on how to apply are available at www.iiasa.ac.at/Research/EEP/FroSpects/Travel_Grants.html . For general information about the FroSpects Research Networking Programme, please see www.iiasa.ac.at/Research/EEP/FroSpects . With best wishes, Åke Brännström & Ulf Dieckmann, on behalf of the FroSpects Steering Committee ------=OPENWEBMAIL_ATT_0.48990261519096 Content-Type: text/html; charset=utf-8 Content-Transfer-Encoding: quoted-printable

Dear colleagues,

The European Research Networking Programme "Frontiers of Speciation Research", supported by 18 National Funding Organizations in member countries of the European Science Foundation, is inviting applications for travel grants intended to foster collaborations between European researchers working on topics related to the Programme.

Support is available for short visits (up to 2 weeks) and exchange grants (up to 3 months), with preference given to junior researchers at a graduate or postdoctoral level. Applicants will want to keep in mind that, owing to the difference in costs, applications for short visits are more likely to be successful than applications for exchange grants. 

Applications are reviewed quarterly after a submission deadline of 24:00 CET on 15 March, 15 June, 15 September, and 15 December. About 4-6 weeks after each deadline, the ESF will inform applicants about the outcome of evaluations.

Further information and instructions on how to apply are available at www.iiasa.ac.at/Research/EEP/FroSpects/Travel_Grants.html .

For general information about the FroSpects Research Networking Programme, please see
www.iiasa.ac.at/Research/EEP/FroSpects .

With best wishes,

Åke Brännström & Ulf Dieckmann, on behalf of the FroSpects Steering Committee

------=OPENWEBMAIL_ATT_0.48990261519096--

00:51
Duke Marine Lab: Research Technician: Conservation Genetics The Duke University Marine Laboratory in Beaufort, North Carolina is seeking a full time research technician to work on the conservation genetics of anadromous river herring. The goal of this project, which is being funded by the National Fish and Wildlife Foundation, is to use genetic and otolith markers to assess the population structure of river herring along the USA Atlantic Coast in order to identify runs that are being impacted by marine bycatch. The duties of this position include: 1) travel and field work for sample collection, 2) laboratory work at the Marine Conservation Molecular Facility involving DNA extractions, PCR, sequencing, and microsatellite genotyping, 3) tasks related to data collection, database management, and analysis, 4) otolith removal and preparation, 5) general field and laboratory tasks, 6) interacting with researchers and managers involved in other aspects of this project, and 7) training students in proper field and laboratory techniques. Please supply a letter of interest, curriculum vitae or resume, and the names and contact information of two individuals who can supply reference letters. Learn more about the Duke University Marine Laboratory: http://nicholas.duke.edu/marinelab/ For more information on this job opportunity, please contact Dr. Eric Palkovacs: eric.palkovacs[at]duke.edu To apply for this position, please go to the Duke University Human Resources website (http://www.hr.duke.edu/jobs/index.php) and search for ALL jobs in Beaufort. The requisition for this job is 400427660. Please submit your resume and supporting materials online. Eric Palkovacs

September 6, 2010

23:51
Registration is now OPEN for the 5th Biennial Conference of the International Biogeography Society Heraklion, Crete, Greece; 7-11 January, 2011 For more information about the conference, and to register, please visit http://www.biogeography.org/html/Meetings/2011/index.html. The meeting is built around four successive SYMPOSIA (8th & 9th January) on broad foundational and cutting-edge topics and approaches in biogeography and macroecology, each with a suite of leading international scientists and *openings for contributed papers*: 1. Mediterranean Biogeography: Where History Meets Ecology Across Scales (Organizers: Spyros Sfenthourakis & Remy J. Petit). 2. New Perspectives on Comparative Phylogeography - Novel Integrative Approaches and Challenges (Organizers: Ana Carnaval & Mike Hickerson). 3. Biogeography and Ecology: Two Lenses in One Telescope (Organizers: Dave Jenkins & Robert E. Ricklefs). 4. Analytical Advancements in Macroecology and Biogeography (Organizers: Alexandre Diniz-Filho & Carsten Rahbek). The meeting also has six sessions of CONTRIBUTED PAPERS (10th January) on key topics: i. Island biogeography ii. Climate change biogeography iii. Conservation biogeography iv. Palaeoecology v. Marine biogeography vii. Hot topics in Biogeography. Dr. Robert E. Ricklefs will give a keynote lecture after receiving the Alfred Russel Wallace Award, recognizing his lifetime of outstanding contributions to biogeography. In addition, before the meeting, on 7th January, three WORKSHOPS will be held: Spatial Analysis in Macroecology, Phylogenetic Analysis in Macroecology, and Communicating Biogeography. On 7th & 11th January arranged FIELD EXCURSIONS will visit a number of Crete's most exciting historic and biogeographic locations. The INTERNATIONAL BIOGEOGRAPHY SOCIETY (IBS; http://www.biogeography.org/) is a non-profit organization, founded in 2000, with the mission to: - Foster communication and collaboration between biogeographers in disparate academic fields. - Increase both the awareness and interests of the scientific community and the lay public in the contributions of biogeographers. - Promote the training and education of biogeographers so that they may develop sound strategies for studying and conserving the world's biota. dawsonmartin[at]sbcglobal.net
23:51
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September 5, 2010

23:51
Dear Colleagues, It might be necessary to update my Treefinder software, to recompile it for newer computers and to develop newer installation procedures. I could also implement deeper search levels and some other extensions. But so far the academic system has been unable to offer me some adequate compensation for my work. My questions are: 1. Is there anybody interested in having updated Treefinder software? 2. If so, is there anybody willing and able to motivate me to do such updates? According to my cultural background, an "adequate" compensation for good work would be something that enabled me to buy a nice house with a garden and raise a big family HERE AT MY HOME PLACE. A traditional permanent income. And I am not interested in working on somebody else's projects as long as I have more useful ideas of my own. But the acedemic system selects people who are good at doing what they are told and good at migrating from place to place all the time. It selects people who accept miserable salaries that neither allow raising a big family nor buying a nice house with a garden. The academic system produces too many professors and hardly any inventors, thinkers. In the academic system one hardly has any time to THINK. The academic system discriminates against people like me. This raises further questions: 3. Is there any advantage in selecting cheap and flexible but possibly incompetent scientists? 4. Is such an academic system useful? 5. If so, for whom? 6. If not, what are good strategies to get rid of such a system? 7. Do we need an alternative academic system that supports free scientists with own ideas? I know that most of you are what the system has selected so far and will therefore agree with the established system in many aspects. Whereas those who would not agree have already been excluded. But I nevertheless ask. The other point is that updating Treefinder requires several new computers, compiler software, internet services etc. that I cannot afford because somebody else gets my income. Gangolf Jobb Gangolf Jobb
23:51
Postdoctoral position(s) are available at Harvard Medical School and Brigham and Women's Hospital, Boston for Evolutionary Genomic studies. Our lab focuses on understanding genomic structural variation with respect to evolution, population genetics and disease associations (http://www.chromosome.bwh.harvard.edu) (e.g., Nat Genet. 42:400,2010; Nature 464:704, 2010). We are looking for both computational and experimental biologists to complement ongoing projects in the laboratory. Interested individuals must have or be close to obtaining a Ph.D. degree. In addition, applicants must demonstrate a high level of research productivity demonstrated by publication in top peer-reviewed journals. Candidates should have a strong background in evolutionary/population genetics, bioinformatics, computational biology and/or biostatistics. Experience with analyzing next generation sequencing or array-CGH data and knowledge of statistical and/or programming languages (PERL, Python) would be desirable, but not prohibitive. Interested applicants should submit current curriculum vitae, statement of research experience and names of three individuals who can provide letters of reference electronically to: Dr. Omer Gokcumen (ogokcumen[at]partners.org) gokcumen[at]gmail.com
00:51
Programmer or Analyst in Bioinformatics We are seeking a programmer or analyst responsible for the maintenance, development, and debugging of software applications for use in the fields of Computational Biology and Bioinformatics (http://kumarlab.biodesign.asu.edu). We have already developed many tools, including MEGA (http://www.megasoftware.net), TimeTree (http://www.timetree.org), and FlyExpress (http://www.flyexpress.net). Come join an active and dynamic team. The scientific programs in CEMI address four primary research themes. 1) personal genomics: predicting adaptive and disease propensities of mutations in individuals; 2) disease origins: tracing pathogen evolution to unravel dynamics of infections and drug resistance; 3) functional proteomics: discovering functionally important elements of genome; and 4) discovery bioinformatics: modeling, analysis, and simulations to discover patterns and test predictions. More information about the Center can be found at http://cemi.asu.edu. You can view and apply for this job at: https://ep.oasis.asu.edu/psp/asuepprd/EMPLOYEE/PSFT_ASUSAPRD/c/HRS_HRAM.HRS_CE.GBL?Page=HRS_CE_JOB_DTL&Action=A&JobOpeningId=24958&SiteId=1&PostingSeq=1 (JOB ID: 24958; ASU, Tempe Campus) Extended deadline: September 15, 2010 (with weekly review thereafter) ******************* Sudhir Kumar (s.kumar[at]asu.edu), Director Center for Evolutionary Medicine & Informatics Biodesign Institute (office A-240) Professor, School of Life Sciences Arizona State University Tempe, Arizona, AZ 85287-5301, USA